Dear,
I have a doubt regarding the input T1 image used for the Hippocampal
Subfield segmentation in Freesurfer 6.0 -
https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields
In this documentation it says that I can use a standard 1mm T1 image or the
same standard 1mm T1 image with an additi
Reply-To: Freesurfer support list
Date: Thursday, June 9, 2016 at 1:23 PM
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] Hippocampal subfields segmentation - what is the
voxel size of the input?
Dear,
I have a doubt regarding the input T1 image used for the Hippocampa
Hi Fernando,
Unfortunately, FreeSurfer does downsample the T1s to 1mm, and the subfield code
assumes that the T1 comes from FreeSurfer… For the paper, I hacked the code to
take advantage of multiple images with higher resolution, but it hasn’t been
thoroughly tested and it’s not publicly availa
;
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] Hippocampal subfields segmentation - what is the voxel
size of the input?
Dear,
I have a doubt regarding the input T1 image used for the Hippocampal Subfield
segmentation in Freesurfer 6.0 -
https://surfer.nmr.mgh.harvard.edu/fswiki/
er support list
Date: Thursday, June 9, 2016 at 1:37 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Hippocampal subfields segmentation - what is the
voxel size of the input?
Hi Matt,
you can use strategy 3 of my previous email ;-)
Cheers,
Eugenio
Juan Eugenio Iglesias
Translation
genio
[e.igles...@ucl.ac.uk]
Sent: Thursday, June 09, 2016 2:36 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Hippocampal subfields segmentation - what is the
voxel size of the input?
Hi Fernando,
Unfortunately, FreeSurfer does downsample the T1s to 1mm, and the subfield code
assu
boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>]
on behalf of Iglesias, Eugenio
[e.igles...@ucl.ac.uk<mailto:e.igles...@ucl.ac.uk>]
Sent: Thursday, June 09, 2016 2:36 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Hippocampal subfields segmentation
] on behalf of Iglesias, Eugenio [
> e.igles...@ucl.ac.uk]
> *Sent:* Thursday, June 09, 2016 2:36 PM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer] Hippocampal subfields segmentation - what is
> the voxel size of the input?
>
> Hi Fernando,
>
> Unfortunately
, Eugenio
[e.igles...@ucl.ac.uk]
Sent: Friday, June 10, 2016 3:36 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Hippocampal subfields segmentation - what is the
voxel size of the input?
Hi Matt,
Bruce actually mentioned this possibility yesterday. Good to hear it doesn’t
crash when you run
.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>]
on behalf of Iglesias, Eugenio
[e.igles...@ucl.ac.uk<mailto:e.igles...@ucl.ac.uk>]
Sent: Friday, June 10, 2016 3:36 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Hippocampal subfields segmentation - what is the
voxel size of th
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