Re: [Freesurfer] How to set original orientation for converted images

2022-11-11 Thread Haiyun Chen
; > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Haiyun Chen > *Sent:* Thursday, November 10, 2022 4:58 PM > *To:* Freesurfer support list > *Subject:* [Freesurfer] How to set original orientation for converted > images >

Re: [Freesurfer] How to set original orientation for converted images

2022-11-10 Thread Fischl, Bruce R.,PHD
...@nmr.mgh.harvard.edu On Behalf Of Haiyun Chen Sent: Thursday, November 10, 2022 4:58 PM To: Freesurfer support list Subject: [Freesurfer] How to set original orientation for converted images External Email - Use Caution Hello FreeSurfer Experts, I converted the aseg.mgz file to aseg.nii using

[Freesurfer] How to set original orientation for converted images

2022-11-10 Thread Haiyun Chen
External Email - Use Caution Hello FreeSurfer Experts, I converted the aseg.mgz file to aseg.nii using mri_convert command, the aseg.mgz file is located in the directory below based on your tutorial: tutorial_data_20190918_1558/practice_with_data/Subj001/mri When I open the file