I mean send your email to the FreeSurfer list as well so that others can
answer (which I'll do on this email).
Are you sure you don't have a typo in your command line? You typed
"normlalized" instead of "normalized"
cheers
Bruce
On Wed, 10 Jul 2013, fatma zribi wrote:
Hi Bruce,
i didn't
Hi Fatma
don't use the -1 flag if you are regtering to a template, only if you are
registering individual surfaces to each other. You probably want the output
to be named lh.sphere_reg and go in the s000/surf dir.
cheers
Bruce
On Tue, 9 Jul 2013, fatma
zribi wrote:
Dear Mr,
When I exec
Dear Mr,
When I execute mris_register to register one subject to a template., I have
this message of error:
mris_register -1 s000/surf/lh.sphere
avg_all_subjects_SD/lh.reg.template.tif sphere_reg
treating target as a single subject's surface...
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nic
Thank you all so much.
I will first try to figure out how 'mris_register' works for
registering a subject to the atlas. Then think about
my problem.
Best,
Xiaojing
2009/10/6 Bruce Fischl
> there is -1 switch you can give mris_register to directly register one
> surface to another, but in ou
there is -1 switch you can give mris_register to directly register one
surface to another, but in our experience using the atlas statistics and
the measures of cross-subject variability stabilizes the whole procedure
On Tue, 6 Oct 2009, Xiaojing Long wrote:
> Hi, Douglas,
>
> Thank you so much
Hi, Douglas,
Thank you so much for your help.
I once ran the recon-all for my subjects and I got the 'xx.sphere.reg's.
Are these results the warped sphere surfaces to the atlas?
I am trying to register the wm surface of subject1 to surface of subject2,
so I am seeking for help to use 'mris_regis
yes, that is correct. All that info is generated as a matter of course
during recon-all.
Bruce
On Tue, 6 Oct 2009, Xiaojing Long wrote:
Hi, Bruce,
Thank you so much for your help.
Now my understanding on 'mris_register' is that£º
1. I need to construct the 'xx.sphere' for all my inputs;
2. F
Hi, Bruce,
Thank you so much for your help.
Now my understanding on 'mris_register' is that：
1. I need to construct the 'xx.sphere' for all my inputs;
2. For the 'source.sphere', I also need to provide 'source.curv'
and 'source.sulc'.
3. For the 'target.sphere', I need to have a statistical f
The surface-based registration is usually done as part of recon-all
(which runs mris_register with all the appropriate arguments). You
trying to do something different?
doug
Xiaojing Long wrote:
> Hi, all,
>
> I am new to FreeSurfer world. I am trying to do the surface-based
> registration us
Hi Xiaojing,
the inputs are an individual subject sphere created with mris_sphere, and
statistics in an atlas coordinate system, usually stored in a tif file that
we supply.
cheers,
Bruce
On Tue, 6 Oct 2009, Xiaojing Long wrote:
> Hi, all,
>
> I am new to FreeSurfer world. I am trying to do
Hi, all,
I am new to FreeSurfer world. I am trying to do the surface-based
registration using FreeSurfer. I found a tool called mris_register,
which is defined as a command registering a surface to an average
surface template(or another single-subject's surface). But I don't
understand how to use
11 matches
Mail list logo
