Re: [Freesurfer] Information regarding FreeSurferColorLUT.txt

2020-05-12 Thread Douglas N. Greve
you can look in the stats folder in the recon-all output. Eg, aseg.stats, wmparc.stats. The ?h.aparc*.stats file are surface-based (so not in the LUT per se), but you can create segmentation volumes from them (eg, the aparc+aseg.mgz) On 5/11/2020 10:56 PM, Safi Ullah . wrote: Externa

Re: [Freesurfer] Information regarding FreeSurferColorLUT.txt

2020-05-11 Thread Douglas N. Greve
On 5/10/2020 12:24 PM, Safi Ullah . wrote: External Email - Use Caution Dear Freesurfer, *Q.1*: The colors of FreeSurferColorLUT.txt corresponds to which mgz file? I wanted to extract Substancia-Nigra but with reference to a conversion, held in 2019, https://www.mail-archive.com/fre

[Freesurfer] Information regarding FreeSurferColorLUT.txt

2020-05-10 Thread Safi Ullah .
External Email - Use Caution Dear Freesurfer, *Q.1*: The colors of FreeSurferColorLUT.txt corresponds to which mgz file? I wanted to extract Substancia-Nigra but with reference to a conversion, held in 2019, https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg63560.html,