For the missing insula problem, try using a newer version of
mri_label2vol
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_label2vol
The 2nd problem is not so easy to fix. You might be better off using
aparc+aseg.mgz as input to mri_label2vol instead of
Dear experts,
I am registering cortical labels from Talairach coordinates to my native
T1. For doing this, I have run the next script lines:
tkregister --targ brainmask.mgz --mov highres_brain.nii.gz --reg
T1FS2Highres.dat --regheader --noedit
mri_label2vol --annot rh.aparc.annot --temp highres
