Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-14 Thread Bruce Fischl
2014 00:53:34 -0400 From: fis...@nmr.mgh.harvard.edu To: andrewz...@live.com.au CC: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Intermediate stages of cortical inflation if it's just for visualization you ca use -i, but in general we just project and unfold on the sphere

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-13 Thread Xuelong Zhao
? Thanks. Date: Sat, 12 Apr 2014 00:53:34 -0400 From: fis...@nmr.mgh.harvard.edu To: andrewz...@live.com.au CC: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Intermediate stages of cortical inflation if it's just for visualization you ca use -i, but in general we just project

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-11 Thread Bruce Fischl
? For instance, if I used -w 1 instead, would this help? Thanks. ___ From: andrewz...@live.com.au To: fis...@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Intermediate stages of cortical inflation Date: Fri

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-11 Thread Bruce Fischl
: [Freesurfer] Intermediate stages of cortical inflation Date: Fri, 11 Apr 2014 16:20:33 +1000 Great, will give this a try. Thanks for clarifying the command flags. Is i t also possible to specify the scale using the flag - scale 1? Date: Fri, 11 Apr 2014 01:38:01 -0400 From: fis

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-10 Thread Xuelong Zhao
...@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu CC: gr...@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Intermediate stages of cortical inflation you can use -w 1 to write out every step in the inflation process and choose what you want. If you want it to preserve surface area during

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-10 Thread Bruce Fischl
: [Freesurfer] Intermediate stages of cortical inflation you can use -w 1 to write out every step in the inflation process and choose what you want. If you want it to preserve surface area during inflation (as opposed to just at the end), also include -scale 1 cheers Bruce On Wed, 9

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-10 Thread Xuelong Zhao
: gr...@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Intermediate stages of cortical inflation you can use -w 1 to write out every step in the inflation process and choose what you want. If you want it to preserve surface area during inflation (as opposed to just at the end), also

Re: [Freesurfer] Intermediate stages of cortical inflation

2014-04-09 Thread Bruce Fischl
you can use -w 1 to write out every step in the inflation process and choose what you want. If you want it to preserve surface area during inflation (as opposed to just at the end), also include -scale 1 cheers Bruce On Wed, 9 Apr 2014, Xuelong Zhao wrote: Hi, I would like to ask whether

[Freesurfer] Intermediate stages of cortical inflation

2014-04-08 Thread Xuelong Zhao
Hi, I would like to ask whether it is possible to display different levels of cortical inflation? I have been using the command: mris_inflate but the -dist and -n flags do not seem to make that much difference. Also, if I use fsaverage lh.orig as the input file and using the default options