[Freesurfer] Intracranial Volume after Hypothalamus Segmentation

2023-05-09 Thread Asmin Alam
External Email - Use Caution Dear FreeSurfer Experts, I am running my subjects through autorecon-1 and then the mri_segment_hypothalamic_subunits function to obtain the divisions of the hypothalamus. However, I just wanted to confirm whether the results are already corrected for i

Re: [Freesurfer] Intracranial Volume after Hypothalamus Segmentation

2023-05-09 Thread Douglas N. Greve
External Email - Use Caution It is not corrected for eTIV. You can compute eTIV as you suggest, ie, running autorecon1 then running mri_segstats --xfm2etiv subject/mri/transforms/talairach.xfm etiv.dat On 5/9/2023 8:01 AM, Asmin Alam wrote: External Email - Use Cautio