How did you create lh.fsaverage.ROI5.mgh and lh.thickness.fsaverage.mgh?
On 03/08/2017 08:15 PM, Elodie Boudes wrote:
> Hello FreeSurfer community,
>
> I am trying to extract the cortical thickness from a specific ROI.
> I followed the pipeline: cortical thickness of a volume-defined ROI.
> But
Hello FreeSurfer community,
I am trying to extract the cortical thickness from a specific ROI.
I followed the pipeline: cortical thickness of a volume-defined ROI. But for
the last step:
mri_segstats \
--seg $SUBJECTS_DIR/fsaverage/surf/lh.fsaverage.ROI5.mgh \
--in lh.thickness.fsaverage.mgh
