External Email - Use Caution Hello Experts,
I am trying to isolate ROIs using labels #601-#628 however I am getting the following output and it is the same for each label. Any idea what is wrong here? Thanks for your help! Akilas-MacBook-Air:B301001 akilasekar$ isolate_labels.csh --vol raparc+aseg.nii --outprefix raparc+aseg_labels --L $label 601 Input file: raparc+aseg.nii Output prefix: raparc+aseg_labels mri_convert raparc+aseg.nii raparc+aseg.nii.gz reading from raparc+aseg.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to raparc+aseg.nii.gz... Label of interest: 601 Number of voxels and volume for label 601 is = (0, 0.000000mm^3) mri_binarize --i raparc+aseg.nii.gz --match 601 --o raparc+aseg_labels_label601.mgz 7.1.1 cwd /Users/akilasekar/Desktop/B301001 cmdline mri_binarize --i raparc+aseg.nii.gz --match 601 --o raparc+aseg_labels_label601.mgz sysname Darwin hostname Akilas-MacBook-Air.local machine x86_64 user akilasekar input raparc+aseg.nii.gz frame 0 nErode3d 0 nErode2d 0 output raparc+aseg_labels_label601.mgz Binarizing based on matching values nMatch 1 0 601 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 0 values in range Counting number of voxels in first frame Found -1 voxels in final mask Count: -1 -1.642760 5242880 -0.000019 mri_binarize done Regards, Akila
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