On 05/08/2013 05:24 PM, Tudor Popescu wrote:
> Sorry, one more iteration:
>
> 1) Command "mri_annotation2label --subject 01 --hemi lh --aparc.a2009s
> --outdir $SUBJECTS_DIR/01/myLabelsDestrieux" doesn't recognise the
> aparc.2009s flag (I tried a few other variations with no luck)!
The syntax i
Sorry, one more iteration:
1) Command "mri_annotation2label --subject 01 --hemi lh --aparc.a2009s
--outdir $SUBJECTS_DIR/01/myLabelsDestrieux" doesn't recognise the
aparc.2009s flag (I tried a few other variations with no luck)!
1') Assuming the above command works and I get .label files correspo
On 05/08/2013 01:28 PM, Tudor Popescu wrote:
>
> 2) ..and when would you use a surface mask versus a surface label?
>
> It is just a matter of convenience.
>
> Sorry, I meant I don't really understand what the difference is
> between a label and a mask, and in which circumstances each
> 2) ..and when would you use a surface mask versus a surface label?
>>
> It is just a matter of convenience.
Sorry, I meant I don't really understand what the difference is between a
label and a mask, and in which circumstances each should be used. I tried
finding an answer on the wiki but no luc
On 05/08/2013 12:02 PM, Tudor Popescu wrote:
> Thanks Doug. Follow-ups below
>
> 2) ..and when would you use a surface mask versus a surface label?
It is just a matter of convenience.
>
> 3) (it seems you skipped over this one:) )
Sorry:) what are you going to do with the ROI?
>
> 4) This opens up
Thanks Doug. Follow-ups below
2) ..and when would you use a surface mask versus a surface label?
3) (it seems you skipped over this one:) )
4) This opens up a coronal slice rather than a 3D image as in the picture I
linked to. Do I need to do anything else in tkmedit after it opens? (I
tried pre
On 05/08/2013 11:43 AM, Tudor Popescu wrote:
> Hello all,
>
> I have some more burning questions, for which I thank you in advance!!
>
> 1) I expected that "mri_annotation2label --subject 01 --hemi lh
> --outdir $SUBJECTS_DIR/myLabels" would give me labels corresponding to
> structures of the st
Hello all,
I have some more burning questions, for which I thank you in advance!!
1) I expected that "mri_annotation2label --subject 01 --hemi lh --outdir
$SUBJECTS_DIR/myLabels" would give me labels corresponding to structures of
the standard FreeSurfer atlas (Destrieux), instead it produced lab
