Re: [Freesurfer] Learning dti processing tutorial

urfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Learning dti processing tutorial External Email - Use Caution In other words I cannot process TRACULA without the T1w images of my subjects? Because this Parkinson database is from NITRC and I only have the diffusion images not the T1. I can practi

Re: [Freesurfer] Learning dti processing tutorial

n scan. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Renew Andrade Sent: Friday, October 18, 2019 5:02:35 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Learning dti processing tutorial External Email - Use Caution I am using a database of NITRC repo

Re: [Freesurfer] Learning dti processing tutorial

tractography, then you run it on the diffusion scan. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Renew Andrade Sent: Friday, October 18, 2019 5:02:35 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Learning dti processing tutorial

Re: [Freesurfer] Learning dti processing tutorial

Sorry, you will have to figure this out for yourself. On 10/18/2019 5:02 PM, Renew Andrade wrote: External Email - Use Caution I am using a database of NITRC repository https://www.nitrc.org/projects/parktdi/ . This images have a nifti file for 1000s/mm^2 and 2500s/mm^2. I don’t know i

Re: [Freesurfer] Learning dti processing tutorial

External Email - Use Caution I am using a database of NITRC repository https://www.nitrc.org/projects/parktdi/ . This images have a nifti file for 1000s/mm^2 and 2500s/mm^2. I don’t know if it is MPRAGE or not. Can you help me? What is

Re: [Freesurfer] Learning dti processing tutorial

What is the input file that you are supplying? Often this happens when the input it a multi-echo MPRAGE. If so, you can run mri_concat multi-echo-mprage.mgz --rms --o mprage.mgz then use mprage.mgz as the input to recon-all On 10/12/2019 4:48 PM, Renew Andrade wrote: > External Email - U

[Freesurfer] Learning dti processing tutorial

External Email - Use Caution Dear freesurfer experts: I am trying to learn dti processing. For using Tracula it appears there is a need for running "recon-all -all -i -s” on every subject before starting to run Tracula. But there seems to be a problem. I have a Parkinson dwi imag