Re: [Freesurfer] Longitudinal Registration

2021-03-18 Thread Suzan Maleki
External Email - Use Caution Thanks a lot Martin. Regards Suzan On Thu, 18 Mar 2021 at 9:09 pm, Reuter, Martin,Ph.D. < mreu...@mgh.harvard.edu> wrote: > > Hi Suzan, > > actually it uses rigid within-subject registration. > The transformation files should be in ./mri/transforms (i

Re: [Freesurfer] Longitudinal Registration

2021-03-18 Thread Reuter, Martin,Ph.D.
Hi Suzan, actually it uses rigid within-subject registration. The transformation files should be in ./mri/transforms (in long and in base). Best, Martin On 17. Mar 2021, at 23:05, Douglas N. Greve mailto:dgr...@mgh.harvard.edu>> wrote: Where is the non-linear registration coming from? Our lo

Re: [Freesurfer] Longitudinal Registration

2021-03-17 Thread Douglas N. Greve
Where is the non-linear registration coming from? Our long stream uses affine. On 3/11/2021 2:59 PM, Suzan Maleki wrote: External Email - Use Caution Hi FS experts, I appreciate it if you help me with a question on your longitudinal processing pipeline. If I use FreeSurfer to genera

[Freesurfer] Longitudinal Registration

2021-03-11 Thread Suzan Maleki
External Email - Use Caution Hi FS experts, I appreciate it if you help me with a question on your longitudinal processing pipeline. If I use FreeSurfer to generate an unbiased T1 image template from N time points (non-linear registration), then how can I apply the within subject