umentation, but it's almost surely user error...
>
Try mris_seg2annot
>
> Quentin Funk, PhD
> Houston Methodist Research Institute
> 713-363-9003
>
>
>
>
> Message: 13
> Date: Fri, 25 May 2018
Institute
713-363-9003
Message: 13
Date: Fri, 25 May 2018 11:06:15 -0400
From: Douglas Greve
Subject: Re: [Freesurfer] Lookup table to surface overlay
To:
Message-ID: <5cb3e6da-99cb-8365-c4f5-4f1cb17f7...@mgh.harvard.edu>
Content-Type: text/plain; c
You might be sampling outside of the brain. Try adding
--projabs -2
To sample 2mm below the pial surface
On 5/25/18 10:32 AM, Funk, Quentin wrote:
Freesurfer experts,
I have some lookup table volume files in MNI space that I'd like to
overlay on a surface (say, fsaverage's lh.pial).
External Email - Use Caution
Freesurfer experts,
I have some lookup table volume files in MNI space that I'd like to overlay on
a surface (say, fsaverage's lh.pial). Currently I'm using this command:
mri_vol2surf --mov look_up_table.nii --regheader fsaverage --interp nearest
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Ledesma, Jason
<jason.lede...@labiomed.org>
Sent: Wednesday, February 21, 2018 1:53:32 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Lookup Table
Hi,
When viewing MRI mgz images in Freeview, is it possible to only loo
Hi,
When viewing MRI mgz images in Freeview, is it possible to only look at certain
structures specified in the look up table? That is, to only view colorization
of one structure to view it more concisely? Specifically, we want to look at
wm-hypointensities to see lesion approximations.
Dear Freesurfers,
I wanted to generate binary masks for areas found in the Freesurfer Color
Lookup Table.
For example, I wanted to use number 433, the Visual_V3d_l. I tried to use
aseg2feat -feat featdir --aseg aparc+aseg
fslmaths -featdir/reg/freesurfer/aparc+
aseg.nii.gz -thr 433v uthr 433 \
Hi Michelle,
we don't currently label V3d automatically.
cheers
Bruce
On Thu, 29 Sep 2011, Michelle
Umali wrote:
Dear Freesurfers,
I wanted to generate binary masks for areas found in the Freesurfer Color
Lookup Table.
For example, I wanted to use number 433, the Visual_V3d_l. I tried to
