[Freesurfer] MRISread error

2013-11-05 Thread Anita van Loenhoud
Hi everyone, I run into an error when I try to do the tutorial on ROI group analysis. I downloaded the tutorial set, but did not put it into FREESURFER_HOME/subjects, because my computer doesn't allow it. I made my own folder and copied everything in there. The error arises when I try to map a lab

Re: [Freesurfer] MRISread error

2013-11-05 Thread Louis Nicholas Vinke
Hi Anita, I don't believe you have the complete path set to your SUBJECTS_DIR environmental variable, unless Desktop is in your root dir which I doubt is the case. Easy way to set the variable: cd /path/to/tutorial/data/ setenv SUBJECTS_DIR $PWD Also, check you have fsaverage symlinked to th

Re: [Freesurfer] MRISread error

2013-11-07 Thread Anita van Loenhoud
It finally worked! Thank you so much Louis. My SUBJECTS_DIR was pointing to a folder within my TUTORIAL_DATA directory (I thought it was supposed to be like that when I read the instructions), but now they point to the same folder and it works. Thanks again! Anita _