The TkR vox2ras will never have direction cosine info. The -conform-dc
will keep the original DC in the "conformed" volume (eg, orig.mgz vs
rawavg.mgz)
On 1/11/2024 3:22 PM, Dipterix Wang wrote:
External Email - Use Caution
I tried `--conform-dc` and the flag was not recognized. `-co
External Email - Use Caution
I tried `--conform-dc` and the flag was not recognized. `-conform-dc`
didn't give me error. However, vox2ras-tkr still didn't include the cosine
information.
This is the Torig:
mri_info --vox2ras-tkr T1.mgz
-1.00.00.0 128.0
If you want to keep the original orientation, you can specify
--conform-dc. Would that fix your problem?
On 12/21/2023 9:30 AM, Dipterix Wang wrote:
External Email - Use Caution
Dear FreeSurer Wizards,
I'm trying to run the recon-all command on one of my template brains
such that th
External Email - Use Caution
Dear FreeSurer Wizards,
I'm trying to run the recon-all command on one of my template brains such
that the resulting Norig and Torig are identical. I understand that fs
always conforms the MRI to 256^3 before segmentation. I wonder if there is
any way
