Re: [Freesurfer] Manual edit to include missing cortex?

2017-03-01 Thread Rockers, Elijah D.
; FS6.0 (Gustav M?rtensson) > > > ---------- > > Message: 1 > Date: Mon, 27 Feb 2017 21:45:39 + > From: "Rockers, Elijah D." > Subject: [Freesurfer] Manual edit to include missing cortex? >

Re: [Freesurfer] Manual edit to include missing cortex?

2017-02-27 Thread Lee Tirrell
Dear Eli, You may have to draw in voxels in the wm.mgz volume if it doesn't extend out far enough. After rerunning, this will push out the white surface, which causes the pial surface to be positioned further out. You can refer to our tutorial page for more information: https://surfer.nmr.m

[Freesurfer] Manual edit to include missing cortex?

2017-02-27 Thread Rockers, Elijah D.
Is there something I can do to extend the pial surface to include cortex that it ignored? In some places there are rather large chunks of cortex not included in the pial surface. http://imgur.com/a/FnAgj Link is to a screenshot, notice the top of the brain. It's fairly pronounced, visible in 12 a