Re: [Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital

2010-11-11 Thread Douglas N Greve
reciated. > > Thank you > > > > Regards; > Naza > > > > -Original Message- > From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu] > Sent: 06 October 2010 18:14 > To: Allison Stevens > Cc: Mustafa, Nazahah; freesurfer@nmr.mgh.harvard.edu > Subject: Re

Re: [Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital

2010-11-11 Thread Mustafa, Nazahah
; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital You can break the aparc.annot into individual labels with mri_annotation2label, then merge the labels of each lobe into a single lobe label with mri_mergelabels, then combine

Re: [Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital

2010-10-06 Thread Douglas N Greve
You can break the aparc.annot into individual labels with mri_annotation2label, then merge the labels of each lobe into a single lobe label with mri_mergelabels, then combine the lobe labels into an annotation with mris_label2annot. The 3rd link below is probably the most useful one for this.

Re: [Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital

2010-10-06 Thread Allison Stevens
Mustafa, There are a couple of relevant pages with information on this. These: http://surfer.nmr.mgh.harvard.edu/fswiki/PALS_B12 http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg13908.html http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg04901.html Allison -- On Wed,

[Freesurfer] Marking four majors lobes: frontal, parietal, temporal, occipital

2010-10-06 Thread Mustafa, Nazahah
Hi, We are using freesurfer version 4.4. We did fully run recon-all, but not clear which file should be used to get label of 4 main lobes; frontal, occipital, temporal and parietal. Could you please give some instruction on marking the lobes. Thank you. Naza The University of Aberdeen is a