[Freesurfer] Mcsrch error during recon-all

2011-09-28 Thread Warren Winter
Hi, Each time I have run recon-all on our subjects, I end up with the same slew of error messages underneath Computing MAP estimate using [x number of] samples and underneath EM alignment process: IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH:

Re: [Freesurfer] Mcsrch error during recon-all

2011-09-28 Thread Nick Schmansky
the IFLAG messages can be ignored if mri_em_register is not exiting with error. which command is running that is exiting with error? can you send that command line from the recon-all.log file? n. On Wed, 2011-09-28 at 16:02 -0400, Warren Winter wrote: Hi, Each time I have run recon-all

Re: [Freesurfer] Mcsrch error during recon-all

2011-09-28 Thread Nick Schmansky
the log does not indicate that mri_em_register exited with an error. it appears that it produced its output correctly and continued through to nearly the end of the stream. the IFLAG messages can be ignored. the log indicates that mri_label2label is exiting with an error when trying to load the