Try following that workflow but don't use --default-seg-merge
On 6/24/2022 4:54 PM, Bouchra Guelib wrote:
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I would like to follow the documentation, however I need all 45
subcortical regions which I can't get them using mri_gtmpvc
Le ven. 24 juin 2022 à
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I would like to follow the documentation, however I need all 45 subcortical
regions which I can't get them using mri_gtmpvc
Le ven. 24 juin 2022 à 15:32, Douglas N. Greve a
écrit :
> This is not the workflow that we support. Follow the workflow in
This is not the workflow that we support. Follow the workflow in the
petsurfer documentation is you want assistance.
On 6/21/2022 4:40 AM, Bouchra Guelib wrote:
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Hi,
I want to register PET to T1 MRI using FSL dof12
then I want to extract the SUV.
I would
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Hi,
I want to register PET to T1 MRI using FSL dof12
then I want to extract the SUV.
I would like you to help me on these lines
Firstly I converted my MRI named ADNI.nii T1 to min305 space then I applied
recon-all. The output is the Folder ADNI
Then I
You can try removing --default-seg-merge, but it may fail.
It can compute a relative SUV (relative to a give n ROI). By default,
this will be pons, but you can chose others. SUV requires knowing things
like the patients weight.
On 6/19/2022 4:15 PM, Bouchra Guelib wrote:
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mri_gtmpvc --i ADNI-PET.nii --reg template.reg.lta --psf 6 --seg gtmseg.mgz
--default-seg-merge --auto-mask 1 .01 --mgx .01 --o gtmpvc.output
I am trying to do like that.
I tried to change the --seg gtmseg.mgz by aparc+aseg.mgz to obtain the 45
what is your mri_gtmpvc command line?
On 6/19/2022 2:22 PM, Bouchra Guelib wrote:
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These are the missing regions in which I want to obtain their SUVr.
Left-Lateral-Ventricle, Left-Inf-Lat-Vent,
3rd-Ventricle, 4th-Ventricle, Left-vessel,
On 6/15/2022 7:40 AM, Bouchra Guelib wrote:
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Hi,
I wonder if someone can help me to do something similar to that:
" the mean intensity of each FreeSurfer region (ROI) for the 45
subcortical and the 68 cortical regions were assessed the mean
intensity of
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Hi,
I wonder if someone can help me to do something similar to that:
" the mean intensity of each FreeSurfer region (ROI) for the 45
subcortical and the 68 cortical regions were assessed the mean intensity of
each FreeSurfer region (ROI) for the 45
