[Freesurfer] Orientation/Primary-Slice-Direction

2013-08-19 Thread Mark Plantz
Hello freesurfers, I have an image that is in RAS orientation with the axial primary slice direction. Is there anyway to change this to LIA orientation with the coronal primary slice direction? I am assuming mri_convert would work, but I'm not sure which flags to use. Thanks in advance. MP __

Re: [Freesurfer] Orientation/Primary-Slice-Direction

2013-08-19 Thread Douglas N Greve
try setting the orientation string to LIA On 08/19/2013 11:15 AM, Mark Plantz wrote: > Hello freesurfers, > >I have an image that is in RAS orientation with the axial primary > slice direction. Is there anyway to change this to LIA orientation > with the coronal primary slice direction? I am