Re: [Freesurfer] Poor subcortical segmentation

2014-11-26 Thread Mihaela Stefan
Thank you for clarifying this. Mihaela On Tue, Nov 25, 2014 at 11:16 PM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: No, I don't think so Bruce On Nov 25, 2014, at 11:05 PM, Mihaela Stefan mikaelastep...@gmail.com wrote: Hi Bruce, I've heard people saying that FS 5.3 is focusing

Re: [Freesurfer] Poor subcortical segmentation

2014-11-25 Thread Bruce Fischl
Hi Mihaela if you want to upload a representative subject we will take a look cheers Bruce On Tue, 25 Nov 2014, Mihaela Stefan wrote: Hello Freesurfers, We noticed that our subcortical segmentations have a poor quality (see attachment). Is there a way to improve the segmentation in an

Re: [Freesurfer] Poor subcortical segmentation

2014-11-25 Thread Mihaela Stefan
Hi Bruce, I uploaded a subject. Thanks! Mihaela On Tue, Nov 25, 2014 at 10:13 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Mihaela if you want to upload a representative subject we will take a look cheers Bruce On Tue, 25 Nov 2014, Mihaela Stefan wrote: Hello Freesurfers,

Re: [Freesurfer] Poor subcortical segmentation

2014-11-25 Thread Mihaela Stefan
Hi Bruce, I've heard people saying that FS 5.3 is focusing on better output for cortical thickness and that I should use 5.0 for subcortical segmentation because it's better. Does that make sense? Thanks! Mihaela On Tue, Nov 25, 2014 at 10:43 AM, Mihaela Stefan mikaelastep...@gmail.com wrote:

Re: [Freesurfer] Poor subcortical segmentation

2014-11-25 Thread Bruce Fischl
No, I don't think so Bruce On Nov 25, 2014, at 11:05 PM, Mihaela Stefan mikaelastep...@gmail.com wrote: Hi Bruce, I've heard people saying that FS 5.3 is focusing on better output for cortical thickness and that I should use 5.0 for subcortical segmentation because it's better. Does