Re: [Freesurfer] Problem running recon-all example from installation guide

2020-02-19 Thread Tim Schäfer
External Email - Use Caution Hi Andreas, If you want to run recon-all on Bert, I would suggest to copy him to some place where you have write access and use that as the SUBJECTS_DIR. Running FreeSurfer as root is a bad idea and usually leads to trouble later (e.g., the output

[Freesurfer] Problem running recon-all example from installation guide

2020-02-19 Thread Andreas Vitikan
External Email - Use Caution Hello, I am trying to get the examples running as per the FreeSurfer installation guide. I initially got a recon-all not found error which turned out to be due to the lack of tcsh/csh, which I installed (I found this fix in the mailing list) and now ge