Re: [Freesurfer] Problem with Recon-All for Volmetric

2017-05-30 Thread Bruce Fischl
you mean not to generate surfaces/parcellations/thickness? I guess you could run -autorecon1 -autorecon2. That would do the start of the surface stuff, but not much (and not long) cheers Bruce On Tue, 30 May 2017, Becker, Valerie wrote: Hi all, Forgive me, as I' new at this, but I cant s

Re: [Freesurfer] Problem with Recon-All for Volmetric

2017-05-30 Thread Douglas N Greve
you can run it with -autorecon1 -autorecon2 On 05/30/2017 04:00 PM, Becker, Valerie wrote: > > Hi all, > > > Forgive me, as I' new at this, but I cant seem to quite make heads or > tails of the Recon-all page with instructions on how to divide it the > commands. We're just trying to run indivi

[Freesurfer] Problem with Recon-All for Volmetric

2017-05-30 Thread Becker, Valerie
Hi all, Forgive me, as I' new at this, but I cant seem to quite make heads or tails of the Recon-all page with instructions on how to divide it the commands. We're just trying to run individual volumetric analyses at the moment. Is there a way to do that with a recon- proc? So as to shorten pr