Re: [Freesurfer] Problem with version of mri_surfcluster provided with fspalm

2020-03-31 Thread Syam Gadde
e red herrings! -syam From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Syam Gadde Sent: Friday, March 27, 2020 12:34 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Problem with version of mri_surfcluster provided with f

Re: [Freesurfer] Problem with version of mri_surfcluster provided with fspalm

2020-03-27 Thread Syam Gadde
edu Subject: Re: [Freesurfer] Problem with version of mri_surfcluster provided with fspalm External Email - Use Caution Actually I was just sending an example command to demonstrate the same error. I'll see if I can get the actual command fspalm was running. -syam _

Re: [Freesurfer] Problem with version of mri_surfcluster provided with fspalm

2020-03-27 Thread Syam Gadde
lf of Douglas N. Greve Sent: Friday, March 27, 2020 10:43 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Problem with version of mri_surfcluster provided with fspalm Hi Syam, it looks like fspalm is not creating the correct command line for mri_surfcluster (the --in should be an o

Re: [Freesurfer] Problem with version of mri_surfcluster provided with fspalm

2020-03-27 Thread Douglas N. Greve
Hi Syam, it looks like fspalm is not creating the correct command line for mri_surfcluster (the --in should be an output of palm, not the fsaverage surface). Can you send the full terminal output? doug On 3/25/2020 9:13 AM, Syam Gadde wrote: > External Email - Use Caution > > Hi, > > W

[Freesurfer] Problem with version of mri_surfcluster provided with fspalm

2020-03-25 Thread Syam Gadde
External Email - Use Caution Hi, We have a user trying to use fspalm. I followed all the directions to install, but are getting an error with the new mri_surfcluster that we were asked to download with fspalm. Here is the dummy command I ran to replicate the error: mri_surfcl