It contains the volumes of the white matter parcellation. You can make a
table with asegstats2table and specifying --stats=wmparc.stats
doug
On 03/05/2014 11:16 AM, Victor Kovac wrote:
So, I assume the aseg.mgz contains the values represented in the
asegstats2table, but what values does the
The wmparc is off because the surfaces are incorrect. The aseg does not
have to follow the surfaces, but wmparc does
doug
On 03/03/2014 03:10 PM, Victor Kovac wrote:
Hi Bruce and Doug,
cp aseg.auto.mgz aseg.mgz was my last step before running
-autorecon2-cp -autorecon3, as suggested by
I think that it should. To be safe, I would cp aseg.auto.mgz aseg.mgz
otherwise aseg.mgz will not change (any differences will be interpreted
as manual changes)
doug
On 03/02/2014 10:07 AM, Bruce Fischl wrote:
Hi Victor
hmmm, I'm not sure why that didn't work. Perhaps someone else can
Hi Victor
for each subject I think you want to run:
set mdir=$SUBJECTS_DIR/$subject/mri
mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz \
-lta $mdir/transforms/cc_up.lta $subject
cp aseg.auto.mgz aseg.mgz
then run recon-all from normalization2 forward (check the recon-all -help
for
Dear Bruce,
A few weeks ago you made code mods to mri_em_register and got recon-all to
process a subject of mine, MPS1036-1. You sent me the new
aseg.auto_noCCseg.mgz and told me to run recon-all -make all -s MPS1036-1.
I did this but I get the message
make: Nothing to be done for 'all'
and when
Hi Victor
you can look in the recon-all -help and run the stages that are after
mri_ca_label. Not sure why -make all didn't work, perhaps Zeke and/or Nick
can comment?
Bruce
On Thu, 2 Jan 2014, Victor Kovac wrote:
Dear Bruce,
A few weeks ago you made code mods to mri_em_register and got
