[Freesurfer] Problems running Monte Carlo Simulations

Hi all, I'm trying to run Monte Carlo simulations on cortical thickness data I got using mri_glmfit, but I'm running into some errors. 1) I used the command mri_glmfit-sim --glmdir lh.thickness.fwhm20.diagnosis_scanner.dods.glmdir/ --cache 2.0 pos The error I receive says cannot find

Re: [Freesurfer] Problems running Monte Carlo Simulations

On 04/11/2014 02:52 AM, Gautam Tammewar wrote: Hi all, I'm trying to run Monte Carlo simulations on cortical thickness data I got using mri_glmfit, but I'm running into some errors. 1) I used the command mri_glmfit-sim --glmdir lh.thickness.fwhm20.diagnosis_scanner.dods.glmdir/ --cache

Re: [Freesurfer] Problems running Monte Carlo Simulations

That should have been --nreps 1 (not 100:) On 04/11/2014 11:04 AM, Douglas N Greve wrote: On 04/11/2014 02:52 AM, Gautam Tammewar wrote: Hi all, I'm trying to run Monte Carlo simulations on cortical thickness data I got using mri_glmfit, but I'm running into some errors. 1) I used

Re: [Freesurfer] Problems running Monte Carlo Simulations

I've just created the following docs for mri_mcsim doug mri_mcsim --o top-output-dir --base csdbase --surface subjectname hemi --nreps nrepetitions --fwhm FWHM FWHM2 FWHM3 ... --fwhm-max FWHMMax : sim with fwhm=1:FWHMMax (default 30) --avgvtxarea : report cluster