Re: [Freesurfer] QA measures mgz

2015-07-27 Thread Jacek Manko
I can't recommend anything in that case, since I am just relying on available, but very scanty documentation. I think people were using norm.mgz, but the question how these results corespond to other volumes has not been addressed yet. Some normative, semi-technical paper on QA measures in

Re: [Freesurfer] QA measures mgz

2015-07-27 Thread Bruce Fischl
it depends on which gm you are looking at. For cortex you can use the brain.mgz, for any subcortical structure you can use the norm cheers Bruce On Mon, 27 Jul 2015, Jacek Manko wrote: I can't recommend anything in that case, since I am just relying on available, but very scanty

[Freesurfer] QA measures mgz

2015-07-21 Thread zalewk
Excellent, thank you for sharing! I have one more question. When running the mri_cnr function I tried using a number of different .mgz files with varying results, which would you recommend for the most accurate gm/wm and gm/csf CNR? Best, KZ