Re: [Freesurfer] QDEC bad fd number

2014-03-04 Thread Mihaela Stefan
Hello, I am re-posting this since I haven't got an answer yet. Thanks! Mihaela On Fri, Feb 21, 2014 at 3:55 PM, Mihaela Stefan mikaelastep...@gmail.comwrote: Hi freesurfers, I get this error when I load qdec.table.dat. Is it something wrong or should I ignore it? Verifying subject

Re: [Freesurfer] QDEC bad fd number

2014-03-04 Thread dgw
Are those subjects in your SUBJECTS_DIR? What is the output of ls $SUBJECTS_DIR ? On Tue, Mar 4, 2014 at 1:10 PM, Mihaela Stefan mikaelastep...@gmail.com wrote: Hello, I am re-posting this since I haven't got an answer yet. Thanks! Mihaela On Fri, Feb 21, 2014 at 3:55 PM, Mihaela Stefan

Re: [Freesurfer] QDEC bad fd number

2014-03-04 Thread dgw
Please be sure to 'reply all' so everyone may participate. Yes, You need to set the SUBJECTS_DIR before using freesurfer tools. HTH D On Tue, Mar 4, 2014 at 2:02 PM, Mihaela Stefan mikaelastep...@gmail.com wrote: It says No such file or directory The environment for SUBJECTS_DIR was set as

Re: [Freesurfer] QDEC bad fd number

2014-03-04 Thread Mihaela Stefan
Sorry.. We had Louis Vinke come here to train our lab last year. He helped us set the environment for FS He taught us to cd to the working directory and then use the command sd to set the directory. I thought that was enough to use freesurfer tools. On Tue, Mar 4, 2014 at 2:09 PM, dgw

[Freesurfer] QDEC bad fd number

2014-02-21 Thread Mihaela Stefan
Hi freesurfers, I get this error when I load qdec.table.dat. Is it something wrong or should I ignore it? Verifying subject data.sh: 1: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject '6027' in SUBJECTS_DIR .sh: 1: Syntax error: Bad fd number ERROR: