Re: [Freesurfer] QSM Hippocampal Segementation

2016-06-28 Thread Bruce Fischl
Hi Jessica if we have T1/PD maps we typically run them through mri_synthesize to create a strongly T1-weighted image that is then passed to recon-all. Can you tell us more about what data you have? cheers Bruce On Tue, 28 Jun 2016, Jessica Sevick wrote: Hello,  I was wondering if it

[Freesurfer] QSM Hippocampal Segementation

2016-06-28 Thread Jessica Sevick
Hello, I was wondering if it was possible to use the hippocampal subfield segmentation function (for FreeSurfer V 6.0) on QSM images? We are working on quantitative stratification of the hippocampus. If you could let me know any thoughts/suggestions that would be great. Thanks, Jessica