Thanks, Bruce, Doug,
I will check how to do that.
Hemant
On Thu, Feb 16, 2012 at 11:21 AM, Douglas N Greve wrote:
> Hi Hemant, sorry for the delay in getting back to you. I'm not sure what
> could be causing the problem. FreeSurfer definitely reads the direction
> cosines from the dicom. If you
Hi Hemant, sorry for the delay in getting back to you. I'm not sure what
could be causing the problem. FreeSurfer definitely reads the direction
cosines from the dicom. If you upload the dicom volume to our file drop,
I'll take a look. filedrop url is at the end of this email.
doug
Hemant Bokil
hmmm, I'll wait for Doug to comment as he knows far more about the dicom
stuff than I do
Bruce
On Fri, 10 Feb 2012, Hemant Bokil wrote:
Hi Bruce,
Thanks very much for your prompt reply. I am puzzled that freesurfer doesn't
get the direction cosines. Which fields is it looking for in the dicom
Hi Bruce,
Thanks very much for your prompt reply. I am puzzled that freesurfer
doesn't get the direction cosines. Which fields is it looking for in the
dicom metadata ? When I load the slices in Matlab, I can see
ImagePositionPatient and ImageOrientationPatient and SliceLocation and they
all seem r
Hi Hemant
sorry for missing your previous post. I'm not sure what to tell you though,
if the direction cosines are nans that's going to be trouble. You could
still visualize your data in a slice viewer, but you may never be able to
tell left from right. Where did you get the dicoms? Are they r
Hello,
I had posted this question earlier but no one picked it up so I am trying
again. Briefly, I have been having difficulties with the very first step of
the recon-all pipeline, namely, in conversion of my dicom datasets to
freesurfer's mgz format. The error message (attached below) suggests tha