yes and this is the error: mri_fdr dyld: Library not loaded: @executable_path/../lib/gcc/lib/libstdc++.6. dylib Referenced from: /Applications/freesurfer/bin/mri_fdr Reason: image not found Trace/BPT trap
>----Messaggio originale---- >Da: gr...@nmr.mgh.harvard.edu >Data: 21-dic-2015 20.04 >A: <freesurfer@nmr.mgh.harvard.edu> >Ogg: Re: [Freesurfer] R: Re: R: R: Re: R: Re: FDR in FS-FAST > >have you tried changing the permission to be exectuable? >chmod a+x mri_fdr > >On 12/21/2015 02:02 PM, std...@virgilio.it wrote: >> Thanks but permission denied persist. >> >> >>> ----Messaggio originale---- >>> Da: gr...@nmr.mgh.harvard.edu >>> Data: 21-dic-2015 17.33 >>> A: <freesurfer@nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] R: R: Re: R: Re: FDR in FS-FAST >>> >>> >>> Try this version for mac >>> ftp://surfer.nmr.mgh.harvard. edu/transfer/outgoing/flat/greve/mri_fdr. >> osx >>> Use mri_surfcluster (or mri_volcluster) to do the clustering >>> >>> >>> On 12/18/2015 05:11 PM, std...@virgilio.it wrote: >>>> I have run >>>> mri_fdr --help >>>> but I obtained this warning: >>>> /Applications/freesurfer/bin/mri_fdr: Permission denied. >>>> >>>> I would also ask you if is possible to threshold the FDR map (p<0. >>>> 05), >>>> eliminating clusters < 5 voxels. >>>> >>>> Thanks >>>> >>>> >>>> Stefano >>>> >>>> >>>> >>>>>> ----Messaggio originale---- >>>>>> Da: gr...@nmr.mgh.harvard.edu >>>>>> Data: 11-dic-2015 20.23 >>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>> Ogg: Re: [Freesurfer] R: Re: FDR in FS-FAST >>>>>> >>>>>> $FREESURFER_HOME/bin >>>>>> >>>>>> On 12/11/15 2:08 PM, std...@virgilio.it wrote: >>>>>>> Thanks, in which folder I should put this file? >>>>>>> >>>>>>> Stefano >>>>>>> >>>>>>> >>>>>>>> ----Messaggio originale---- >>>>>>>> Da: gr...@nmr.mgh.harvard.edu >>>>>>>> Data: 7-dic-2015 19.23 >>>>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>>>> Ogg: Re: [Freesurfer] FDR in FS-FAST >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On 12/07/2015 08:35 AM, std...@virgilio.it wrote: >>>>>>>>> Hi list, >>>>>>>>> I have two concerns, please: >>>>>>>>> 1) It is possible to apply FDR correction on rs-fMRI seed >> based >>>>>>>>> analysis by FS-FAST? If yes, I can I do it? >>>>>>>> try this binary >>>>>>>> ftp://surfer.nmr.mgh.harvard. >>>>> edu/transfer/outgoing/flat/greve/mri_fdr >>>>>>>>> 2) I have apply the FS guidelines and I have used Montecarlo >>>>>>>>> correction with threshold at 1.3 but in the within group >>>> analysis >>>>>>> the >>>>>>>>> clusters are very large. In the guide I read examples with a >>>>>>> threshold >>>>>>>>> at 3. Is there a specific reason? >>>>>>>> There is not a hard-and-fast criteria for the voxel-wise >>>>> threshold. 3 >>>>>>> is >>>>>>>> fine as is 1.3 >>>>>>>>> Thanks >>>>>>>>> >>>>>>>>> Stefano >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> -- >>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>> MGH-NMR Center >>>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>>> Phone Number: 617-724-2358 >>>>>>>> Fax: 617-726-7422 >>>>>>>> >>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard. >>>>>>> edu/transfer/outgoing/flat/greve/ >>>>>>>> _______________________________________________ >>>>>>>> Freesurfer mailing list >>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> >>>>>>>> >>>>>>>> The information in this e-mail is intended only for the person >> to >>>>>>> whom it is >>>>>>>> addressed. If you believe this e-mail was sent to you in error >>>> and >>>>>>> the e-mail >>>>>>>> contains patient information, please contact the Partners >>>>> Compliance >>>>>>> HelpLine at >>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent >>>> to >>>>>>> you in error >>>>>>>> but does not contain patient information, please contact the >>>>> sender >>>>>>> and properly >>>>>>>> dispose of the e-mail. >>>>>>>> >>>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard. >> edu/transfer/outgoing/flat/greve/ >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >gr...@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard. edu/transfer/outgoing/flat/greve/ > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
