Re: [Freesurfer] R: bad output of autorecon2 - is there any way to adjust it?

Hi Paola we'll need the 001.mgz. You can check our wiki for info on sending stuff to us. cheers Bruce On Tue, 28 Dec 2010, Paola Valsasina wrote: Dear Bruce Thank you for your answer. I tried to analyze these data both with FS 4.5 and with FS 5.0. Outputs are similar and bad in both cases.

[Freesurfer] R: bad output of autorecon2 - is there any way to adjust it?

Dear Bruce Thank you for your answer. I tried to analyze these data both with FS 4.5 and with FS 5.0. Outputs are similar and bad in both cases. I think that the major problem is the quality of the starting sequence (3D FFE acquired on a Philips 3T), because I am running FS on another dataset (MP-