Re: [Freesurfer] REPOST: Longitudinal Stream: Recon-all and template

2016-06-30 Thread Bruce Fischl
Hi Tamara 1. Run each timepoint through the cross-sectional stream separately. 2. recon-all will figure out what files to use when you tell it to create the base. cheers Bruce On Thu, 30 Jun 2016, Tamara Tavares wrote: Hello All, I am planning to run the longitudinal stream on my data se

[Freesurfer] REPOST: Longitudinal Stream: Recon-all and template

2016-06-30 Thread Tamara Tavares
Hello All, I am planning to run the longitudinal stream on my data set and I have a few questions: 1) When I run the data cross sectionally using "recon-all -all" should I specify all my subject's T1 volumes (using the -file1.nii -1file2.nii) or can I run each of my subject's T1 volumes individua