Re: [Freesurfer] ROI with precise coordinates

2017-01-20 Thread Dr. M. Shahid
.edu> de la part de Dr. M. Shahid > *Envoyé :* mardi 17 janvier 2017 14:44 > *À :* Freesurfer support list > *Objet :* Re: [Freesurfer] ROI with precise coordinates > > Hi, > > Yes you can use fslmaths and Ants ImageMath to make an ROI from the given > mni coordinates.

Re: [Freesurfer] ROI with precise coordinates

2017-01-20 Thread Lisa Delalande
d.edu de la part de Dr. M. Shahid Envoyé : mardi 17 janvier 2017 14:44 À : Freesurfer support list Objet : Re: [Freesurfer] ROI with precise coordinates Hi, Yes you can use fslmaths and Ants ImageMath to make an ROI from the given mni coordinates. The command is like fslmaths MNI_T1...gz -

Re: [Freesurfer] ROI with precise coordinates

2017-01-17 Thread Dr. M. Shahid
Hi, Yes you can use fslmaths and Ants ImageMath to make an ROI from the given mni coordinates. The command is like fslmaths MNI_T1...gz -mul 0 -add 1 roi xmin xsize ymin ysize zmin zsize tmin tsize ROI_name. For a box of 10mm , you can use fslmaths kernel boxv... or for a sphere you can use Image

Re: [Freesurfer] ROI with precise coordinates

2017-01-16 Thread Lisa Delalande
janvier 2017 15:46 À : freesurfer@nmr.mgh.harvard.edu Objet : [Freesurfer] ROI with precise coordinates Dear all, I would like to know how to make an ROI an FreeSurfer/QDEC with precise coordinates. More precisely, I want an ROI called IFC consisting of combined pars opercularis and pars

[Freesurfer] ROI with precise coordinates

2017-01-09 Thread Lisa Delalande
Dear all, I would like to know how to make an ROI an FreeSurfer/QDEC with precise coordinates. More precisely, I want an ROI called IFC consisting of combined pars opercularis and pars triangularis and with a box of 10 x 10 x 10 mm size, centered at MNI coordinates 10,-15,-5. Does a comman