Hi Bruce,
The exact input is:
mri_mask T1.mgz brain.mgz brain.mgz
This command was invoked by "recon-all -subjid subject
-normalization2", which is part of "recon-all -subjid subject
-autorecon2". Because of the bug, after this command, the manual
edited brain.mgz went back to pre-manual editin
http://web.mit.edu/yuhong/www
=
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To: Yuhong Jiang <[EMAIL PROTECTED]>
Cc: freesurfer@nmr.mgh.harvard.edu, [EMAIL PROTECTED]
Date: Jan 7, 2006 2:43 PM
Subject: Re: [Freesurfer] Re: mri_mask bug
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Cc: freesurfer@nmr.mgh.harvard.edu, [EMAIL PROTECTED]
Date: Jan 7, 2006 2:43 PM
Subject: Re: [Freesurfer] Re: mri_mask bug
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garbled?
it sounds like there&#
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From: [EMAIL PROTECTED] <[EMAIL PROTECTED]>
To: Yuhong Jiang <[EMAIL PROTECTED]>
Cc: freesurfer@nmr.mgh.harvard.edu, [EMAIL PROTECTED]
Date: Jan 7, 2006 2:43 PM
Subject: Re: [Freesurfer] Re: mri_mask bug
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| Dele
it sounds like there's something that went wrong with the skullstripping
if you have to use a threshold of 20. Have you looked at brain.mgz
immediately after skullstripping? The background voxels should be 0.
> Hi Bruce,
>
> The exact input is:
>
> mri_mask T1.mgz brain.mgz brain.mgz
>
> This com
