we do have a procedure but it involved a fair amount of manual intervention
and isn't terribly well documented (and it's evolving). It depends on Andre
van der Kouwe's multi-echo flash sequence, which you would need to get as
well
cheers
Bruce
On Tue, 15 Mar 2011, Auer, Tibor MD. Ph.D. wrote
Tibor,
We are working to put some exvivo wm segmentation methods into the next
FreeSurfer release although I'm not sure where that stands. We do process
our exvivo scans with FreeSurfer but we use scripts that use different
parameters than recon-all since the contrast is different and as you sai
Dear Users,
Is there a way to process fixated brain (after autopsy) with Freesurfer?
I have read somewhere that I should just "invert" the image, but what does
it mean? And would it not increase the noise and the signal from the CSF?
Of course, the brain is without any skull, pia and dura mat
