Re: [Freesurfer] Recommended method of using data with variable sizes

2017-01-18 Thread Bruce Fischl
yes, the easiest thing to do would be to reslice one like the other then register and average them (-rl in mri_convert) On Wed, 18 Jan 2017, Alex Cohen wrote: yes. If you try to feed them both to recon-all, it errors out due to dimension mismatch (lines 939+) so I presume I'd have to do it fi

Re: [Freesurfer] Recommended method of using data with variable sizes

2017-01-18 Thread Alex Cohen
yes. If you try to feed them both to recon-all, it errors out due to dimension mismatch (lines 939+) so I presume I'd have to do it first, unless there is an expert-pref to do this. -Alex Alexander Li Cohen, M.D., Ph.D. E-mail: ale

Re: [Freesurfer] Recommended method of using data with variable sizes

2017-01-18 Thread Bruce Fischl
average what? The different voxel size images? On Wed, 18 Jan 2017, Alex Cohen wrote: I will likely end up running each separately on several subjects to get a handle on how they're behaving; however assuming I did what to average them, have you all found a particular method more useful than a

Re: [Freesurfer] Recommended method of using data with variable sizes

2017-01-18 Thread Alex Cohen
I will likely end up running each separately on several subjects to get a handle on how they're behaving; however assuming I did what to average them, have you all found a particular method more useful than another for this? i.e., mri_robust_register, bbregister, etc... -Alex --

Re: [Freesurfer] Recommended method of using data with variable sizes

2017-01-18 Thread Bruce Fischl
Hi Alex you get to decide whether to average your data or not. It's a totally empirical question which one is better - why don't you run them each and visually inspect the results? cheers Bruce On Wed, 18 Jan 2017, Alex Cohen wrote: Hi all, What is the current best practice recommendation f

[Freesurfer] Recommended method of using data with variable sizes

2017-01-18 Thread Alex Cohen
Hi all, What is the current best practice recommendation for using multiple T1s and/or T2s for recon-all where the sizes of the images are slightly different. For instance: two T1w images of 0.9x0.9x0.9 and 1x1x1 resolution, however the 1x1x1 image seems to have better grey-white separation, etc.