Hello, Usually this error only occurs when using the the mni tools with the perl (version 5.22 or higher). But Yosemite should be pre 5.22 so Im not sure why your encountering that issue.
Can you upload me you subject data so I can take a look? https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange -Zeke On 06/23/2016 10:45 AM, Cook, Bernie wrote: > Hi all, > > In attempting to run a recon-all of the included subject "bert" on Mac > OS X Yosemite and accompanying download, I'm receiving an error at the > Talaraich transform step. However, it does not seem to be outputting a > description of what is happening. > > With the computer I'm using, I often have to input an administrator > password for something as simple as moving a file or running a "sudo" > command. Would this potentially be failing because a certain permission > is needed that is incapable of prompting the user for a password? > > If this could be the case, where might I move the file/how might I > change permissions to access this? > > See below for the requested information. Thanks in advance. > > FREESURFER_HOME: /Applications/freesurfer > Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 > Kernel info: Darwin 14.3.-0 x86_64 > > 1) subject name: bert > 2) command line: recon-all -s bert -all > 3) error message: "recon-all -s bert exited with ERRORS at Thu Jun 23 > 09:48:07 EDT 2016" (during Talaraich transform) > 4) script/recon-all.log: see attached > > * > * > *1455168447449_PastedImage* > Bernard L. Cook > Biomedical Engineering | Class of 2017 > BMES at Ohio State | Professional Development Chair '16-'17 > IBRC| Undergraduate Research Assistant > > 440-623-4710 > cook.1...@osu.edu <mailto:cook.1...@osu.edu> > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
