Re: [Freesurfer] Recon process for skull-stripted data

2022-04-21 Thread Douglas N. Greve
I'm not sure. You can try just passing the skull stripped as input to recon-all. The talairach transform will probably be off, but the rest might work On 4/17/2022 9:09 PM, Muhammed Görünen wrote: External Email - Use Caution Hi, How can I run a recon process if I have just skull st

[Freesurfer] Recon process for skull-stripted data

2022-04-17 Thread Muhammed Görünen
External Email - Use Caution Hi, How can I run a recon process if I have just skull stripted data? I need surface and annot files. Does the process need the volume files produced before the skull-stripting process? Thanks in advance. Best, --Muhammed