Re: [Freesurfer] Reducing FreeSurfer recon-all time

2020-03-31 Thread Bruce Fischl
Hi Xiaojiang do you have multiple cores? If so, you can use -openmp 4 or something to reduce the recon time even on your linux box cheers Bruce On Tue, 31 Mar 2020, Xiaojiang Yang wrote: External Email - Use Caution Freesurfer experts: I know in my powerful Linux

[Freesurfer] Reducing FreeSurfer recon-all time

2020-03-31 Thread Xiaojiang Yang
External Email - Use Caution Freesurfer experts: I know in my powerful Linux machine, recon-all needs about 10 hours to finish all computation. What is the possible way I can use to greatly reduce this computation time from 10 hours to, say 1-3 hours? Is Sun Grid Engine (SGE),