Re: [Freesurfer] Reviewer questions...

2017-01-13 Thread Jerome Maller
Dear FreeSurfer experts, Thankyou so much for your prompt and comprehensive responses! They are excellent and will definitely guide me in how to respond to the Reviewers of my manuscript. Kind regards, Jerome On 14 January 2017 at 01:03, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote

Re: [Freesurfer] Reviewer questions...

2017-01-13 Thread Iglesias Gonzalez, Eugenio
Thanks for your good points, Antonin. More on the matter: When segmenting standard resolution (~ 1mm) T1 scans, the position of the internal boundaries between the hippocampal substructures largely relies on prior knowledge acquired from our ex vivo training data and summarized in our statisti

Re: [Freesurfer] Reviewer questions...

2017-01-12 Thread Antonin Skoch
Dear Jerome, I think I could chime in with my opinion: The Schoemaker et al paper results are based on hippocampus/amygdala segmentations in FreeSurfer 4.4. Hippocampal subfields segmentation module from development version you used should be more precise than 4.4. version and also the anatomi

Re: [Freesurfer] Reviewer questions...

2017-01-09 Thread Jerome Maller
Hi Bruce, The hippocampal subfield segmentation. Regards, Jerome On 10 January 2017 at 15:25, Bruce Fischl wrote: > Hi Jerome > Do you mean the hippocampal subfield segmentation or the aseg whole > hippocampus one? > CheerS > Bruce > > > On Jan 9, 2017, at 6:37 PM, Jerome Maller > wrote: > > >

Re: [Freesurfer] Reviewer questions...

2017-01-09 Thread Bruce Fischl
Hi Jerome Do you mean the hippocampal subfield segmentation or the aseg whole hippocampus one? CheerS Bruce > On Jan 9, 2017, at 6:37 PM, Jerome Maller wrote: > > Jerome ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mg

[Freesurfer] Reviewer questions...

2017-01-09 Thread Jerome Maller
Dear FreeSurfer development team, I have received Reviewer comments from a manuscript I recently submitted based on results from FreeSurfer (beta version) output. The focus of the study is the hippocampal tail. Whilst one Reviewer likes it, the other has asked a number of questions regarding the s