Re: [Freesurfer] Robust PET signal projection

2019-01-07 Thread Greve, Douglas N.,Ph.D.
No. You can use mri_concat with --mtx option, where the argument to --mtx is an asci matrix that is square and diagonal with the weighting factors on the diagonal. You could also use mri_glmfix with the --X option, where X is an ascii column matrix of weighting factors (make sure that the the

Re: [Freesurfer] Robust PET signal projection

2019-01-06 Thread Matthieu Vanhoutte
External Email - Use Caution Hi Douglas, Could you answer to my previous request ? Best, Matt > Le 21 déc. 2018 à 20:31, Matthieu Vanhoutte a > écrit : > > Thanks Douglas. > > Is there a way to compute a weighted average in one command with fscalc ? > > Best, > Matthieu >

Re: [Freesurfer] Robust PET signal projection

2018-12-21 Thread Matthieu Vanhoutte
External Email - Use Caution Thanks Douglas. Is there a way to compute a weighted average in one command with fscalc ? Best, Matthieu Le mar. 18 déc. 2018 à 18:03, Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> a écrit : > you can use mri_vol2surf to sample at different

Re: [Freesurfer] Robust PET signal projection

2018-12-18 Thread Greve, Douglas N.,Ph.D.
you can use mri_vol2surf to sample at different depths. If you want a simple average across cortex, then you can use --projfrac-avg .35 .65 .05 If you want to do more sophisticated weighting, then you will have to sample at each layer and then combine the files (eg, fscalc). Unless you have very

Re: [Freesurfer] Robust PET signal projection

2018-12-18 Thread Matthieu Vanhoutte
External Email - Use Caution Dear experts, Is there any advice on this point ? Best, Matthieu Le mer. 12 déc. 2018 à 10:47, Matthieu Vanhoutte < matthieuvanhou...@gmail.com> a écrit : > Dear Freesurfer's experts, > > In order to have a robust PET signal projection, is it

[Freesurfer] Robust PET signal projection

2018-12-12 Thread Matthieu Vanhoutte
External Email - Use Caution Dear Freesurfer's experts, In order to have a robust PET signal projection, is it possible compute the projected PET signal as a weighted average of the PET signal intersecting with the surfaces ranging from 35 to 65% of the cortical tickness with a