Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed} {Disarmed}

2019-08-01 Thread Mark Wagshul
r-boun...@nmr.mgh.harvard.edu On Behalf Of Anderson M. Winkler Sent: Wednesday, July 31, 2019 11:10 AM Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed} External Email - Use Caution Hi, It's possible to analyse longitudi

Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed}

2019-07-31 Thread Anderson M. Winkler
External Email - Use Caution Hi, It's possible to analyse longitudinal designs with PALM. Some mild assumptions must hold, and those assumptions are different than those of an LME model. PALM doesn't assume normality, doesn't require a specified form for the dependence structure,

Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed}

2019-07-29 Thread Greve, Douglas N.,Ph.D.
I'm not sure that is a way to do this as it is quite tricky managing the exchangeability in longitudinal data. Maybe PALM can do it. I'm cc'ing Anderson in case he wants to weigh in. On 7/28/19 7:24 PM, Mark Wagshul wrote: > > External Email - Use Caution > > Doug, > > Thanks.  Unfortuna

Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed}

2019-07-28 Thread Mark Wagshul
External Email - Use Caution Doug, Thanks. Unfortunately, this is only for the GLM, is there an equivalent version for the linear mixed model? I haven’t seen one. I guess we could figure out how to integrate lme into mri_glmsim, but I’m not sure that’s a better use of our tim