Not sure. The first step would be to check the affine registration with
freeview template_coregistered.mgz input
where input is the input to samseg
On 8/31/2021 5:27 AM, achille.teil...@chu-lyon.fr wrote:
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Dear experts,
We are working with a large MRI
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Hi Achille,
It sounds like the initial affine registration of the template in SAMSEG is
failing for some of your subjects. If that is the case, you will see that
"template_coregistered.nii" is probably not aligned with your original data.
As the
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Dear experts,
We are working with a large MRI dataset (FLAIR, T1) and we are performing
SAMSEG pipeline to estimate lesion volumes. We computed the registration
between the two input images and the resampling as advised in the SAMSEG page
