Re: [Freesurfer] SUBJECT_DIR using bbregister

2021-11-15 Thread Tim Schäfer
External Email - Use Caution I forgot to mention: to check whether it worked out in your shell, after the export/setenv command and before running bbregister, you can type: echo $SUBJECTS_DIR This should work for all shells. Best, Tim > On 11/15/2021 1:17 PM Tim Schäfer w

Re: [Freesurfer] SUBJECT_DIR using bbregister

2021-11-15 Thread Tim Schäfer
External Email - Use Caution I think what you want to do is reset the environment variable SUBJECTS_DIR to the location of your subject before running the command. How to do that depends on your shell. For bash-like shells, this should do it: export SUBJECTS_DIR=/path/to/yo

[Freesurfer] SUBJECT_DIR using bbregister

2021-11-15 Thread m-maiworm
External Email - Use CautionDear List,   when I try to use bbregister it gives out an ERROR saying it can't find the subject.   I use freesurfer on a server where it is installed for everybody to use, but i'm not allowed to write in the subject_dir in this home-directory (e.g. "