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I am not entirely sure :(
I did see someone else have the same exact issue and it says it was solved
here:
https://secure-web.cisco.com/1CITrHzRp2iUgFdotZPCjYwChbUZqcT7oSVSJaU_8J6xwEILhM4iXHWDVOXatRp-mQR2HIMUXdHX_dTFuyN7peCATDb-h7EBEbZap-khz2O0q7GmIB0
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Is SUBJECTS_DIR for Freesurfer being set to live under a temporary
scratch directory initially created by and then subsequently used by Matlab?
If so, maybe Freesurfer is deleting files and/or changing file permissions
there - causing Matlab to subse
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Hello,
I am trying to run the recon -all function in my MATLAB pipeline using
Freesurfer 6.0.0 and I have no issues with it. However, when I run the
recon -all step using Freesurfer 7.2.0 and run the following command (the
recon -all step finishes with
