what are you using as input? I can't tell from the image you sent, but
it looks pretty blurry. What is the resolution? What kind of acquistion?
On 6/28/2022 11:38 PM, Wang, Yu wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I used the _recon-all -s c1NT816 -i smwrc1NT816_screen_mpr.nii
-no-ants-n4 -all _command, and the script of recon-all did not shows
any errors. But the segmentation of this shows very strange and the
screenshot of FREEVIEW was attached in *MailScanner has detected a
possible fraud attempt from "secure-web.cisco.com" claiming to be*
https://github.com/YuWang220/Freesurfer/blob/main/fig%20of%20segmentation.jpeg
<https://secure-web.cisco.com/1DiZCsT29ph0nxelagWzgxiK83DeI03n5r7jqcEK7snAAyg9TxhKtwxwpPCFqiDaQcC1a1e8mNPYQyGKxwFRyS-dX3F_PS_44WccUtx_8ZbXveT7bjTaxMcaqWoaa0CHPea46JonumfLLCAbkisBQt_0akJKBSY4ov3r-0_dZ7MdA0kEB7_RuI-lWujP-9nHZYqJd-8CsjbjxjCMLmWgp5_7GqDUJHvZrK-mzI95Um4UY52HngD4qaIZPLPwIfZUtzuYZySoVXwOuyaWTOJ3bWlgzUQ01WTVSRtwwZMWFp6z0dj1TpZOY7aTszY5JT7zZ_gXGFQ0Upx4t8qXS4q0zpg/https%3A%2F%2Fgithub.com%2FYuWang220%2FFreesurfer%2Fblob%2Fmain%2Ffig%2520of%2520segmentation.jpeg>.
I have search for this mistake online, and I only find a similar one
(*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://adni.bitbucket.io/reference/docs/UCSFFRESFR/UCSFFreeSurferMethodsSummary.pdf
<https://secure-web.cisco.com/17rnPwV1D9noAjOEul8R2iNskGBej5a9MhpLH-Wq1n1UTwWaLKUYif4WjjQIpFYfGcGELAU4hefsUlZIyPHi9sTL62OaiHBSZgx9nykIkIu3R3cPNrfdXgGpHsIAyQas1WsIkiWEBI1DE6e0ikGqpU7bDMRcxnchfYrBzIEYsrTkagR7hqfOYldtjdrxKe2Kekz5A59Ik7qms6k4RSvY7mGDZr4N6SjAldmgjZzl3AFVF-t94jyII5g9HIZcOITgvDxg1_Stz5kq0FrNZtlrCHTYMXanC34kZqzl4x_TtezgaIOD2EemJvK8cdy5ZFwUv7MUUoMsUzyANby9Jv4kUlQ/https%3A%2F%2Fadni.bitbucket.io%2Freference%2Fdocs%2FUCSFFRESFR%2FUCSFFreeSurferMethodsSummary.pdf>)
but it do not show the method about what would cause this problems and
how to solve it.
1. FreeSurfer version:
freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
2. Platform: ubantu 20.04.4
3. uname -a: Linux sulu 5.4.0-113-lowlatency #127-Ubuntu SMP PREEMPT
Wed May 18 15:12:18 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
4. recon-all.log: see attached
I will be appreciated if you can give me a hand with these problems.
And looking forward to your reply.
Thanks in advance,
Yu
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