Re: [Freesurfer] Segmentation Volume to Cortical Labels

2017-11-25 Thread Douglas Greve
try mris_seg2annot Run it with --help to get examples On 11/13/17 3:06 PM, Hengda He wrote: Hi Freesurfer Developers, I have a manually edited segmentation of the brain cortical regions, and I want to map it to cortical parcellation labels on both white matter surface and pial surface. So I

Re: [Freesurfer] Segmentation Volume to Cortical Labels

2017-11-13 Thread Bruce Fischl
Hi Hengda yes, I think you can either use mri_vol2surf or mris_sample_parc to get your segmentation onto the surface cheers Bruce On Mon, 13 Nov 2017, Hengda He wrote: > Hi Freesurfer Developers, > > I have a manually edited segmentation of the brain cortical regions, and I > want to map it t

[Freesurfer] Segmentation Volume to Cortical Labels

2017-11-13 Thread Hengda He
Hi Freesurfer Developers, I have a manually edited segmentation of the brain cortical regions, and I want to map it to cortical parcellation labels on both white matter surface and pial surface. So I am wondering if there is any way in FreeSurfer that can map the segmentation volume to cortical la