External Email - Use Caution
You can also use something like
mri_segstats --seg aparc+aseg.mgz --id 1027 --mask overlay.nii.gz --sum
summary.dat
you can set a threshold to the mask with --maskthresh
On 6/17/2023 7:45 AM, John Anderson wrote:
External Email - Use
External Email - Use Caution
Let's say the red spot is overlay.nii.gz
1) convert aparc+aseg from mgz to nii.gz using:
mri_convert aparc+aseg.mgz aparc+aseg.nii.gz
2) create mask between overlay and the atlas using fslmaths:
fslmaths aparc+aseg.nii.gz -mas overlay.nii.gz
