Re: [Freesurfer] Skull stripping with external brainmask

Pass your mask to recon-all with -xmask On 1/30/2023 1:13 AM, Boa Sorte Silva, Narlon wrote: External Email - Use Caution Hi there, I just wanted to follow-up on this. Thanks! Nárlon Cássio *Nárlon Cássio Boa Sorte Silva* PhD (He, Him, His) CIHR and MSHR BC/PARF Postdoctoral Resear

Re: [Freesurfer] Skull stripping with external brainmask

port list mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Monday, January 30, 2023 at 01:14 To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Skull stripping with external brainmask External Email - Use Caution Hi there, I just wante

Re: [Freesurfer] Skull stripping with external brainmask

t;Boa Sorte Silva, Narlon" Reply-To: Freesurfer support list Date: Monday, January 30, 2023 at 01:14 To: Freesurfer support list Subject: Re: [Freesurfer] Skull stripping with external brainmask External Email - Use Caution Hi there, I just wanted to follow-up on this. Thanks! Nár

Re: [Freesurfer] Skull stripping with external brainmask

External Email - Use Caution Hi there, I just wanted to follow-up on this. Thanks! Nárlon Cássio Nárlon Cássio Boa Sorte Silva PhD (He, Him, His) CIHR and MSHR BC/PARF Postdoctoral Research Fellow Aging, Mobility, and Cognitive Health Lab Djavad Mowafaghian Centre for Brain Heal

[Freesurfer] Skull stripping with external brainmask

External Email - Use Caution Dear FreeSurfer experts, I dealing with some issues regarding skull stripping in FreeSurfer (v7.1.1). It seems like the conventional approaches (e.g., adjusting -wsthresh) doesn’t seem to help. As well, applying these preprocessing steps to the raw T